FastQCFastQC Report
Fri 10 May 2024
EGAF00008072782

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008072782
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7154315
Total Bases536.5 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCC681790.9529773290664446No Hit
AGGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGC472210.6600352374755655No Hit
GCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCC370640.5180649719784494No Hit
GGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGC326580.45647976081567554No Hit
CTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCC192380.26890065645697736No Hit
CCAACACCTGTGCGGCTCACACCTGGTGGAAGCTCTCTACCTAGTGTGCG158950.22217361131009744No Hit
CAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATG151600.21190009106392435No Hit
CAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGA146530.20481345873084983No Hit
CCTGTGGATGCGCCTCCTGCCCCTGCTGGCGCTGCTGGCCCTCTGGGGAC141160.19730749904078868No Hit
CTCACACCTGGTGGAAGCTCTCTACCTAGTGTGCGGGGAACGAGGCTTCT109510.1530684628786963No Hit
GGGGACCTGACCCAGCCGCAGCCTTTGTGAACCAACACCTGTGCGGCTCA108450.15158683955067676No Hit
AAGCTCTCTACCTAGTGTGCGGGGAACGAGGCTTCTTCTACACACCCAAG103580.14477975878892668No Hit
GAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGC100450.1404047766976992No Hit
GGGGAACGAGGCTTCTTCTACACACCCAAGACCCGCCGGGAGGCAGAGGA98930.1382801847556335No Hit
GGCTTCTTCTACACACCCAAGACCCGCCGGGAGGCAGAGGACCTGCAGGT98430.1375813058273224No Hit
AGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGCCTCCTGCCCC97750.1366308304848193No Hit
GACCCAGCCGCAGCCTTTGTGAACCAACACCTGTGCGGCTCACACCTGGT89960.1257422967817324No Hit
CATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCTTGCTGCCC88890.12424669587514667No Hit
AAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGCCTCCTGCCC86560.12098992006921697No Hit
CTGGGGACCTGACCCAGCCGCAGCCTTTGTGAACCAACACCTGTGCGGCT81440.11383339984331134No Hit
CAGAGGACCTGCAGGTGGGGCAGGTGGAGCTGGGCGGGGGCCCTGGTGCA81130.11340009490775846No Hit
ACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCAT80960.1131624760721327No Hit
GCCCTGTGGATGCGCCTCCTGCCCCTGCTGGCGCTGCTGGCCCTCTGGGG80250.11217006799393092No Hit
TGTGGATGCGCCTCCTGCCCCTGCTGGCGCTGCTGGCCCTCTGGGGACCT79720.11142925632992118No Hit
CAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGCCTCCTGCC78670.10996161058046787No Hit
GCTTCTTCTACACACCCAAGACCCGCCGGGAGGCAGAGGACCTGCAGGTG77530.10836816662391857No Hit
GCTCACACCTGGTGGAAGCTCTCTACCTAGTGTGCGGGGAACGAGGCTTC76250.10657903656744215No Hit
GGGAACGAGGCTTCTTCTACACACCCAAGACCCGCCGGGAGGCAGAGGAC74360.10393727421842622No Hit
GCGCCTCCTGCCCCTGCTGGCGCTGCTGGCCCTCTGGGGACCTGACCCAG73720.10304270919018801No Hit
GAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATG73550.10280509035456224No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)