FastQCFastQC Report
Wed 8 May 2024
EGAF00008072834

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008072834
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9696905
Total Bases727.2 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCC806190.8313889844233804No Hit
AGGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGC757330.7810017732462059No Hit
GCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCC362720.3740574956648539No Hit
GGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGC242330.24990447983145136No Hit
CCAACACCTGTGCGGCTCACACCTGGTGGAAGCTCTCTACCTAGTGTGCG214400.2211014751614046No Hit
CTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCC177930.18349153673259663No Hit
AAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGCCTCCTGCCC118730.1224411294119103No Hit
CAACACCTGTGCGGCTCACACCTGGTGGAAGCTCTCTACCTAGTGTGCGG115050.11864610409197573No Hit
TGTGGATGCGCCTCCTGCCCCTGCTGGCGCTGCTGGCCCTCTGGGGACCT102540.10574508051795908No Hit
TGTCCTTCTGCCATGGCCCTGTGGATGCGCCTCCTGCCCCTGCTGGCGCT102420.10562132969230903No Hit
CAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATG100180.10331131428017495No Hit
CCTGTGGATGCGCCTCCTGCCCCTGCTGGCGCTGCTGGCCCTCTGGGGAC99940.10306381262887487No Hit
GAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATG98120.10118692510651595No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)