FastQCFastQC Report
Wed 8 May 2024
EGAF00008072863

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008072863
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11615931
Total Bases871.1 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGGTTCAAGGGCTTTATTCCATCTCTCTCGGTGCAGGAGGCGGCGGGT145460.12522457304541496No Hit
GTAGAAGAAGCCTCGTTCCCCGCACACTAGGTAGAGAGCTTCCACCAGGT136060.11713223847490141No Hit
CCACGCTTCTGCAGGGACCCCTCCAGGGCCAAGGGCTGCAGGCTGCCTGC126440.10885050883997159No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)