FastQCFastQC Report
Wed 8 May 2024
EGAF00008072928

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008072928
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12615232
Total Bases946.1 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCC1021990.8101238249126137No Hit
AGGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGC933950.7403351757621264No Hit
GCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCC401190.31802031068473413No Hit
GGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGC251030.1989896024107999No Hit
CCAACACCTGTGCGGCTCACACCTGGTGGAAGCTCTCTACCTAGTGTGCG244880.19411454343447668No Hit
CTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCC191420.151737201503706No Hit
AAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGCCTCCTGCCC130960.10381101195760807No Hit
CAACACCTGTGCGGCTCACACCTGGTGGAAGCTCTCTACCTAGTGTGCGG129770.10286770786300244No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)