FastQCFastQC Report
Sat 11 May 2024
EGAF00008073028

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008073028
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22133156
Total Bases3.3 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCC1329530.6006960778661661No Hit
CTGGTTCAAGGGCTTTATTCCATCTCTCTCGGTGCAGGAGGCGGCGGGTG615570.27812120422410613No Hit
CTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCC587370.26538013828665014No Hit
CACGCTTCTGCAGGGACCCCTCCAGGGCCAAGGGCTGCAGGCTGCCTGCA554080.2503393551285682No Hit
GCTGGTTCAAGGGCTTTATTCCATCTCTCTCGGTGCAGGAGGCGGCGGGT519370.234657000565125No Hit
GAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATG469120.21195350541061564No Hit
GCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCC404640.1828207418770283No Hit
TGCTGGTTCAAGGGCTTTATTCCATCTCTCTCGGTGCAGGAGGCGGCGGG381030.1721534877357752No Hit
CAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATG371090.16766248789824642No Hit
CAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGA356000.1608446621891609No Hit
ATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTG339540.15340785561715645No Hit
CTGCAGGCTGCCTGCACCAGGGCCCCCGCCCAGCTCCACCTGCCCCACCT337520.15249519770248762No Hit
CTTTATTCCATCTCTCTCGGTGCAGGAGGCGGCGGGTGTGGGGCTGCCTG335250.1514695870756073No Hit
GCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGCCTCCTGCCCCT326320.1474349161954129No Hit
CTTTATTCCATCTCTCTCGGTGCAGGAGGCGGCGGGTGGGGGGCTGCCTG325500.1470644312993592No Hit
CGCTTCTGCAGGGACCCCTCCAGGGCCAAGGGCTGCAGGCTGCCTGCACC315220.14241981577322277No Hit
AAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGCCTCCTGCCC288610.13039712908543183No Hit
CCACGCTTCTGCAGGGACCCCTCCAGGGCCAAGGGCTGCAGGCTGCCTGC278400.1257841403187146No Hit
TGTGGATGCGCCTCCTGCCCCTGCTGGCGCTGCTGGCCCTCTGGGGACCT267930.12105368073129742No Hit
CTCCAGCTGGTAGAGGGAGCAGATGCTGGTACAGCATTGTTCCACAATGC266390.12035789202407465No Hit
TCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGG239930.10840297696361062No Hit
CCCAGCTCCACCTGCCCCACCTGCAGGTCCTCTGCCTCCCGGCGGGTCTT229200.10355504655549348No Hit
CAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGCCTCCTGCC227420.10275082324454768No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)