FastQCFastQC Report
Sun 12 May 2024
EGAF00008083257

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008083257
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521981447
Total Bases4.1 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGATA13544007925.947297509982185No Hit
CGACATAG12633895824.203725769586594No Hit
ATGGTCGC12422586523.79890429324014No Hit
GATTCGCT12364007523.686679998034492No Hit
CGACCTAG44017700.8432809298679921No Hit
GATTCGCA8987480.17218006600912772No Hit
ATGGTCGA7004920.1341986394393822No Hit
CGACATAA5370160.10288028493855644No Hit
TCCAGAAA5349450.10248352754192813No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)