FastQCFastQC Report
Sat 25 May 2024
EGAF00008083258

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008083258
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521981447
Total Bases12.5 Gbp
Sequences flagged as poor quality0
Sequence length24
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGACGCGACTGCGCCTCCATAAT15089060.28907272637220766No Hit
CAGACGCGTCCGGAAACTTGCTCA13990520.26802715078108896No Hit
CAGACGCGTGGCTAAGACCTTTGG10021070.19198134450169452No Hit
CAGACGCGCCATCCTTGGCTTTGG9455940.18115471448930637No Hit
CAGACGCGGGAATATCTACAAACA8191260.156926267151407No Hit
CAGACGCGGATTGCAACGCTTGTC7788720.14921449880574011No Hit
CAGACGCGTGGTTAGGAGCAGCTA7141720.1368194222427986No Hit
CAGACGCGGTTTAGCCTGACCATT6587510.12620199506822702No Hit
CAGACGCGATGAGGAGACAAATGC6384930.1223210142179632No Hit
CAGACGCGGGCCGATACTAGCCTT5788480.1108943628795297No Hit
CAGACGCGAAGCTATGATTAGGTG5383210.10313029382440866No Hit
CAGACGCGGACACCTTGCCGGGTT5352810.10254789764587169No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)