FastQCFastQC Report
Wed 28 Jun 2023
EGAF00008086164

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008086164
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10222021
Sequences flagged as poor quality0
Sequence length35-76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN2731942.6726026096013693No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1134471.1098294554472155No Hit
GGTGGCGACGACGCGGGGGACGACGGGGCCCCGCGGGGAAGAGGGGAGGG126360.12361547682204917No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)