FastQCFastQC Report
Wed 28 Jun 2023
EGAF00008086272

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008086272
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9529397
Sequences flagged as poor quality0
Sequence length35-76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN2019532.119263160092921No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT805990.8457932857661403No Hit
CGCCCTGGGAAAACCACCTTCGTGATCATGGTATCTCCCCTGCCCCC205700.21585835913856877No Hit
GTTTCGGTGTAATGGAGATAGGCAGGCGTGTACGGGGTCGAGTCCTCTAT136090.14281071509561413No Hit
GGTGGCGACGACGCGGGGGACGACGGGGCCCCGCGGGGAAGAGGGGAGGG116770.12253660960919142No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)