FastQCFastQC Report
Wed 28 Jun 2023
EGAF00008086288

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008086288
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10390229
Sequences flagged as poor quality0
Sequence length35-76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN3963413.8145550016270096No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT360710.34716270449862074No Hit
CGCCCTGGGAAAACCACCTTCGTGATCATGGTATCTCCCCTGCCCCC106080.10209592108123891No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)