FastQCFastQC Report
Wed 28 Jun 2023
EGAF00008086701

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008086701
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86442712
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAGCTGT2456240928.414667276982243No Hit
GCCAACAA2273148326.296587039055414No Hit
AGGCTACC1993804023.065032943436574No Hit
TATTGGTG1832156721.19503955405749No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)