FastQCFastQC Report
Wed 28 Jun 2023
EGAF00008086709

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008086709
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85575292
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAGCTGT2424388128.33046833191057No Hit
GCCAACAA2256340526.366728611337955No Hit
AGGCTACC1978101623.11533567422709No Hit
TATTGGTG1810492021.15671425345531No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)