FastQCFastQC Report
Mon 10 Jul 2023
EGAF00008087718

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008087718
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences191783784
Sequences flagged as poor quality0
Sequence length4-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG2171050.11320300156346899No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA2084130.10867081442088973No Hit
CCTTGGTCCGTGTTACAAGACGGGTCGGGTGGGTAGCCGACGTCGCCGCC2059830.10740376256211527No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)