FastQCFastQC Report
Mon 10 Jul 2023
EGAF00008087747

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008087747
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences159254767
Sequences flagged as poor quality0
Sequence length1-98
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC9416550.591288422782346No Hit
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG4199200.26367813529876943No Hit
CGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCTAGCTGCGAG2649340.1663585994885792No Hit
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG2104660.13215679754189086No Hit
CATGGGTCAGTCGGTCCTGAGAGATGGGCGAGCGCCGTTCCGAAGGGACG1725320.10833710239895049No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)