FastQCFastQC Report
Sun 9 Jul 2023
EGAF00008087752

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008087752
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92149664
Sequences flagged as poor quality0
Sequence length4-101
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG1301050.14118879478497068No Hit
AACCCTTGTGTCGAGGGCTGACTTTCAATAGATCGCAGCGAGGGAGCTGC975150.10582241515281053No Hit
CCCTTTCGATCGGCCGAGGGCAACGGAGGCCATCGCCCGTCCCTTCGGAA938800.10187774531657542No Hit
CCTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCA926170.10050714889204587No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)