FastQCFastQC Report
Mon 10 Jul 2023
EGAF00008087758

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008087758
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences111849266
Sequences flagged as poor quality0
Sequence length4-101
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG2431960.2174319141262849No Hit
CGCCTTAGGACACCTGCGTTACCGTTTGACAGGTGTACCGCCCCAGTCAA1438720.1286302585123804No Hit
CCCTTTCGATCGGCCGAGGGCAACGGAGGCCATCGCCCGTCCCTTCGGAA1281440.11456847647082459No Hit
GCTCAGACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCG1235200.1104343411605401No Hit
CCTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCA1140490.10196669506977363No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)