FastQCFastQC Report
Mon 10 Jul 2023
EGAF00008087773

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008087773
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences111518450
Sequences flagged as poor quality0
Sequence length1-98
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG3336860.29922044289532357No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC2818490.2527375514993259No Hit
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG1820480.16324473663326564No Hit
CGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCTAGCTGCGAG1399060.1254554739596901No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)