FastQCFastQC Report
Thu 29 Jun 2023
EGAF00008089239

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008089239
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38612805
Sequences flagged as poor quality0
Sequence length25-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA662120.17147679377346453No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT493910.12791352505988624No Hit
CAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAG406930.10538731905128362No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)