FastQCFastQC Report
Thu 9 May 2024
EGAF00008089240

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008089240
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38612805
Total Bases3.8 Gbp
Sequences flagged as poor quality0
Sequence length25-101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT580570.15035685700637394No Hit
CTTGAGCCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC490730.12708996406761952No Hit
CTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTC386590.10011963647810616No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)