FastQCFastQC Report
Sun 9 Jul 2023
EGAF00008090699

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008090699
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34636501
Sequences flagged as poor quality0
Sequence length151
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTATCTGTACTGGCCTGCGAGAGTGCGAAGGTAGCGGTGACAATGGGAC2766250.798651688286874No Hit
GAGCCAATAACTGGCCTGCGACAGTGCCCGGGTAGCGGTGACAAGTCTGT1958530.5654526131262508No Hit
ATGTAATGGACTGGCCTGCGATTCCATTGAGGTAGCGGTGACAAAGTTTA1110170.32052025116509314No Hit
CAAACCGCCACTGGCCTGCGAAGTGAAAGGGGTAGCGGTGACATTCAGCT564090.16285998403822605No Hit
AAGCTCAACACTGGCCTGCGAACAATATGGGGTAGCGGTGACATCAGATT381860.11024785673356555No Hit
AAATCCTGTACTGGCCTGCGAGTGCAGTAAGGTAGCGGTGACAACGCTGT372280.10748198843757342No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)