FastQCFastQC Report
Mon 10 Jul 2023
EGAF00008090717

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008090717
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences333710365
Sequences flagged as poor quality0
Sequence length151
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACTTGGAACTGGCCTGCGATTGGAGGTAGGTAGCGGTGACATGCATAG4197900.1257947142277106No Hit
AACTTCTCCACTGGCCTGCGATAGTCTTGAGGTAGCGGTGACACAACCTC3968340.11891569505190526No Hit
ATCCCGGAGACTGGCCTGCGACACTTATGTGGTAGCGGTGACAAGTTGTT3878980.11623792386550534No Hit
GAATCTGTAACTGGCCTGCGAAATCCTGAAGGTAGCGGTGACAGAACGAC3430180.10278913572252993No Hit
CAAGCAAGCACTGGCCTGCGACACTTATGTGGTAGCGGTGACAATGGTCC3372460.10105949211376758No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)