FastQCFastQC Report
Sun 9 Jul 2023
EGAF00008090865

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008090865
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences233597648
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTACCTAC6650408528.469501114155054No Hit
ACGTTACA6156897026.356844997001No Hit
GACGACGG5297851322.679386309574486No Hit
CGTAGGTT4805979820.573750811052687No Hit
CGTAGGTA5110110.21875691145657428No Hit
GACGACGA3728410.1596081994798167No Hit
TTACCTAA3116840.13342771327903097No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)