FastQCFastQC Report
Sun 9 Jul 2023
EGAF00008090869

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008090869
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences628905201
Sequences flagged as poor quality0
Sequence length10
%GC69

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGGTAGGT62342829499.1291363163651No Hit
CGCGGGAGGT13257420.21080156403413178No Hit
CGCGGTATGT7032690.11182432565063172No Hit
CGCGGTAGGA6623140.10531221540971164No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)