FastQCFastQC Report
Sun 9 Jul 2023
EGAF00008090881

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008090881
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences265477472
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTAGTCA7075420426.651679130046862No Hit
ACATTGGC6561990524.717692430037904No Hit
TGCGAATG6429040524.21689664123365No Hit
GAGCCCAT6002435822.60996292747582No Hit
CTTAGTAA3764150.14178792541764146No Hit
TGCGAATA3570490.13449314448798128No Hit
GAGCCCAA3472910.1308175030384499No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)