FastQCFastQC Report
Sun 9 Jul 2023
EGAF00008090886

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008090886
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences738699009
Sequences flagged as poor quality0
Sequence length10
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAGGGTCGT73161809899.04143488569375No Hit
GTAGGGTCGT23241350.3146254390061054No Hit
NTAGGGTCGT8452620.11442576607003409No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)