FastQCFastQC Report
Sun 9 Jul 2023
EGAF00008090902

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008090902
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences665215594
Sequences flagged as poor quality0
Sequence length10
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTACCAGGTT65848220598.98778846125487No Hit
CTACCAGGTG12587010.18921700142826178No Hit
CTACCAGGGT11142400.1675005832770661No Hit
NTACCAGGTT6953410.10452866803961304No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)