FastQCFastQC Report
Thu 9 May 2024
EGAF00008093855

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008093855
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36715888
Total Bases3.7 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACACCCGCCGC897530.2444527557116418No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA541320.14743481078273252No Hit
TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACACCC507910.13833520790781365No Hit
GTTTGCATTAATAAATTAAAGCTCCATAGGGTCTTCTCGTCTTGCTGTGT452360.12320551800354114No Hit
TTGGCATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACACCCGCCGC394730.10750931585802855No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)