FastQCFastQC Report
Wed 28 Jun 2023
EGAF00008094295

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008094295
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2496034
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTTCTCGTGTGAATGAGGGTTTTATGTTGTTAATGTGGTGGGTGAGTG79330.31782419630501824No Hit
GTTTTTTCATAGGAGGTGTATGAGTTGGTCGTAGCGGAATCGGGGGTATG71580.2867749397644423No Hit
GTTCAAACTGTCATTTTATTTTTACGTTGTTAGATATGGGGAGTAGTGTG49710.19915594098477823No Hit
GGCGCTTCCAATTAGGTGCATGAGTAGGTGGCCTGCAGTAATGTTAGCGG48090.1926656447788772No Hit
GAAAAATCCTGCGAAGAAAAAAACTTCTGAGGTAATAAATAGGATTATCC47260.1893403695622736No Hit
GTTTTTTGTGAATTCTTCGATAATGGCCCATTTGGGCAAAAAGCCGGTTA43900.17587901446855292No Hit
GTTTTATGTTGTTAATGTGGTGGGTGAGTGAGCCCCATTGTGTTGTGGTA39810.15949301972649413No Hit
GGAAAGTTGAGCCAATAATGACGTGAAGTCCGTGGAAGCCTGTGGCTACA38780.1553664733733595No Hit
GTGAAAACGTAGGCTTGGATTAAGGCGACAGCGATTTCTAGGATAGTCAG35820.1435076605527008No Hit
GTCACTCCAGGTTTATGGAGGGTTCTTCTACTATTAGGACTTTTCGCTTC33930.13593564831248292No Hit
GATTTTTAGGGGAATTAATTCTAGGACGATGGGCATGAAACTGTGGTTTG33370.13369208913019615No Hit
GGGGCATCCATATAGTCACTCCAGGTTTATGGAGGGTTCTTCTACTATTA31290.12535886931027382No Hit
GTTTTGTATGTTCAAACTGTCATTTTATTTTTACGTTGTTAGATATGGGG30500.12219384832097639No Hit
TGAAAACGTAGGCTTGGATTAAGGCGACAGCGATTTCTAGGATAGTCAGT30150.12079162383204715No Hit
CTTTTTTGTCTAGATTTTATGTATACGGGTTCTTCGAATGTGTGGTAGGG28290.11333980226230893No Hit
GTGAAGTAGGCCTTATTTCTCTTGTCCTTTCGTACAGGGAGGAATTTGAA27840.1115369422051142No Hit
GTAAATACGGGCCCTATTTCAAAGATTTTTAGGGGAATTAATTCTAGGAC26000.10416524774902906No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)