FastQCFastQC Report
Wed 28 Jun 2023
EGAF00008094296

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008094296
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2496034
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCATTCCTACTACTCAACTTAAACTCCAGCACCACGACCCTACTACTAT34170.13689717367632012No Hit
CGCAAATCAGCCACTTTAATTAAGCTAAGCCCTTACTAGACCAATGGGAC30150.12079162383204715No Hit
CTCAACTTAAACTCCAGCACCACGACCCTACTACTATCTCGCACCTGAAA27090.10853217544312298No Hit
CCAAAATCCATTTCACTATCATATTCATCGGCGTAAATCTAACTTTCTTC26490.10612836203352999No Hit
CTTCAATCAGCCACATAGCCCTCGTAGTAACAGCCATTCTCATCCAAACC25830.10348416728297773No Hit
CGTAAATCTAACTTTCTTCCCACAACACTTTCTCGGCCTATCCGGAATGC25650.10276302326009983No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT25170.10083997253242544No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)