FastQCFastQC Report
Wed 28 Jun 2023
EGAF00008094302

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008094302
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences942566
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGCCCTCCTAATGACCTCCGGCCTAGCCATGTGATTTCACTTCCACT20750.2201437352928071No Hit
CCCAACTAAAAATATTAAACACAAACTACCACCTACCTCCCTCACCAAAG17150.18195012338658512No Hit
TGACAATCGAGTAGTACTCCCGATTGAAGCCCCCATTCGTATAATAATTA16140.17123469337956174No Hit
GTGAAATTGACCTGCCCGTGAAGAGGCGGGCATAACACAGCAAGACGAGA16110.17091641328034324No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT15020.15935223634207046No Hit
CTCACTTCTAGGAATACTAGTATATCGCTCACACCTCATATCCTCCCTAC14800.1570181822811347No Hit
CTTCAATCAGCCACATAGCCCTCGTAGTAACAGCCATTCTCATCCAAACC14510.1539414746553557No Hit
GGCATTCCTAATGCTTACCGAACGAAAAATTCTAGGCTATATACAACTAC14290.1516074205944199No Hit
GCCCTCTCAGCCCTCCTAATGACCTCCGGCCTAGCCATGTGATTTCACTT13630.14460525841161254No Hit
CCCACTTCCACTATGTCCTATCAATAGGAGCTGTATTTGCCATCATAGGA12910.13696653603036815No Hit
CTACCACCTACCTCCCTCACCAAAGCCCATAAAAATAAAAAATTATAACA12600.13367764167177684No Hit
CTCCTACATACTTCCCCCATTATTCCTAGAACCAGGCGACCTGCGACTCC11920.12646329275615714No Hit
CTCGCATCTGCTATAGTGGAGGCCGGAGCAGGAACAGGTTGAACAGTCTA11780.12497798562647072No Hit
AAAAAATTTAACACCCATAGTAGGCCTAAAAGCAGCCACCAATTAAGAAA11350.1204159708710053No Hit
GTCAACCTCAACCTAGGCCTCCTATTTATTCTAGCCACCTCTAGCCTAGC11330.12020378413819298No Hit
CGCAATGGCATTCCTAATGCTTACCGAACGAAAAATTCTAGGCTATATAC10250.10874570056632639No Hit
CGAAAATCTGTTCGCTTCATTCATTGCCCCCACAATCCTAGGCCTACCCG10180.10800304700148318No Hit
CCAAAATCCATTTCACTATCATATTCATCGGCGTAAATCTAACTTTCTTC10140.1075786735358585No Hit
CTCAGACGCTCAGGAAATAGAAACCGTCTGAACTATCCTGCCCGCCATCA10130.10747258016945231No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG9870.10471415264289186No Hit
CGTAAATCTAACTTTCTTCCCACAACACTTTCTCGGCCTATCCGGAATGC9780.1037593123452363No Hit
CTTACACCTAGCAGGTGTCTCCTCTATCTTAGGGGCCATCAATTTCATCA9770.10365321897883013No Hit
CGAAACCACACTTATCCCCACCTTGGCTATCATCACCCGATGAGGCAACC9570.10153135165070669No Hit
CGCATTCCTACTACTCAACTTAAACTCCAGCACCACGACCCTACTACTAT9510.10089479145226965No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)