FastQCFastQC Report
Wed 28 Jun 2023
EGAF00008094311

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008094311
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1883977
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAAAATCCTGCGAAGAAAAAAACTTCTGAGGTAATAAATAGGATTATCC33720.1789830767573065No Hit
GTTTTTTCATAGGAGGTGTATGAGTTGGTCGTAGCGGAATCGGGGGTATG31850.1690572655610976No Hit
GGCGCTTCCAATTAGGTGCATGAGTAGGTGGCCTGCAGTAATGTTAGCGG28580.15170036576879653No Hit
GTTTTCTCGTGTGAATGAGGGTTTTATGTTGTTAATGTGGTGGGTGAGTG27310.14495930682805575No Hit
GTTCAAACTGTCATTTTATTTTTACGTTGTTAGATATGGGGAGTAGTGTG22780.12091442729927171No Hit
GGGAATTGCATCTGTTTTTAAGCCTAATGTGGGGACAGCTCATGAGTGCA21780.11560650687349155No Hit
GTCACTCCAGGTTTATGGAGGGTTCTTCTACTATTAGGACTTTTCGCTTC21540.11433260597130432No Hit
GGAAAGTTGAGCCAATAATGACGTGAAGTCCGTGGAAGCCTGTGGCTACA21140.11220943780099225No Hit
GGGGCATCCATATAGTCACTCCAGGTTTATGGAGGGTTCTTCTACTATTA21010.11151940814564083No Hit
GTTTTTTGTGAATTCTTCGATAATGGCCCATTTGGGCAAAAAGCCGGTTA19260.10223054740052559No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)