FastQCFastQC Report
Sun 9 Jul 2023
EGAF00008094765

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008094765
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences190863630
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAGGCTC5329957327.92547380556474No Hit
AAGACGGA4667817724.4562974098313No Hit
GTCCTTCT4519886923.68123722680953No Hit
TCTTAAAG4282234322.43609377019603No Hit
NGAGGCTC2680680.14045001659037923No Hit
GTCCTTCA2496460.13079809914544746No Hit
NAGACGGA2348370.1230391562813722No Hit
NTCCTTCT2276260.1192610661339722No Hit
CGAGGCTA2250490.11791088747499982No Hit
NCTTAAAG2150120.11265215903103175No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)