FastQCFastQC Report
Sun 9 Jul 2023
EGAF00008094768

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008094768
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences253858382
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATCCGC7374478029.049574577372038No Hit
TGGAGGCT6635462726.138442417079617No Hit
ATTCTAAG6056633323.858315223958215No Hit
CCCGATTA5004418619.713426677398424No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)