FastQCFastQC Report
Sun 9 Jul 2023
EGAF00008094771

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008094771
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences252974243
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATCCGC7344471729.03248810196064No Hit
TGGAGGCT6618244426.161732204491667No Hit
ATTCTAAG6032289723.845469912128564No Hit
CCCGATTA4984357119.703022097787244No Hit
ATTCTCAG2780160.10989893544221417No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)