FastQCFastQC Report
Wed 28 Jun 2023
EGAF00008094783

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008094783
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27610286
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAGCAC824305129.855000415424886No Hit
TTAGCTCG757666227.441447002758316No Hit
GACCTATT577415520.91305754674182No Hit
ACTTAGGA556283720.147697854343125No Hit
GACCTATA415760.1505815622482143No Hit
NGGAGCAC413340.14970507730343685No Hit
NTAGCTCG376920.13651434106839747No Hit
ACTTAGAA362310.13122283485219965No Hit
NACCTATT292160.10581563696949753No Hit
TTAGCTCA284900.10318618213516514No Hit
NCTTAGGA282600.10235315925376508No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)