FastQCFastQC Report
Wed 28 Jun 2023
EGAF00008094786

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008094786
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31622777
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCACACT1099254934.76149169315522No Hit
GTACGCGG831849426.305387411105606No Hit
CCTTTGTC635022820.08118388843586No Hit
TAGGATAA550208517.39912026069058No Hit
AGCACACA623640.19721228151468165No Hit
NGCACACT555210.1755728157587172No Hit
NTACGCGG419410.132629085674544No Hit
GTACGCGA415260.13131674046210426No Hit
CCTTTGTA335490.10609125188467794No Hit
NCTTTGTC322570.10200558919920284No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)