FastQCFastQC Report
Wed 28 Jun 2023
EGAF00008094792

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008094792
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32386427
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCACACT1123202834.68128176041155No Hit
GTACGCGG852853126.333658232814628No Hit
CCTTTGTC651325020.11104837220852No Hit
TAGGATAA562940217.381979185292654No Hit
AGCACACA620970.1917377301299708No Hit
NGCACACT568290.1754716566912429No Hit
NTACGCGG430160.1328210734700682No Hit
GTACGCGA427240.13191946119897696No Hit
CCTTTGTA343180.10596414355927561No Hit
NCTTTGTC331400.10232681734233913No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)