FastQCFastQC Report
Sat 25 May 2024
EGAF00008096275

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008096275
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences141291770
Total Bases16.1 Gbp
Sequences flagged as poor quality0
Sequence length35-143
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN3601850125.492285219443428No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3956220.2800035699177666No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)