FastQCFastQC Report
Tue 8 Aug 2023
EGAF00008096333

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008096333
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences343693729
Sequences flagged as poor quality0
Sequence length35-143
%GC55

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN31228840590.8624099452219No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21437180.6237291574208501No Hit
CGGAAGAGCGTCGTGTAGGGAAAGAGTGTTTCGTAGGGTGTAGATCTCGG4326030.1258687498485025Illumina Single End PCR Primer 1 (96% over 29bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)