FastQCFastQC Report
Tue 8 Aug 2023
EGAF00008096344

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008096344
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences238894112
Sequences flagged as poor quality0
Sequence length35-143
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN18893910479.08905850304087No Hit
CGGAAGAGCACACGTCTGAACTCCAGTCACCGCTCATTATCTCGTATGCC3264070.13663250101367086TruSeq Adapter, Index 2 (97% over 34bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)