FastQCFastQC Report
Fri 4 Aug 2023
EGAF00008101600

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008101600
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42257164
Sequences flagged as poor quality0
Sequence length35-51
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1092160.2584555840046436No Hit
GGCGTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCT815180.19290930172218845No Hit
CTCTGATCGTTTTTTCACTGACCCGGTGAGGCGGGGGGGCGAGCCCCGAGG531160.12569702973914673No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)