FastQCFastQC Report
Fri 4 Aug 2023
EGAF00008101654

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008101654
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25418020
Sequences flagged as poor quality0
Sequence length51
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGATGAAAAATTATAACCAAGCATAATATAGCAAGGACTAACCCCTATA999670.39329184570631387No Hit
GGCGATGAAAAATTATAACCAAGCATAATATAGCAAGGACTAACCCCTATA949440.3735302749781454No Hit
GGGCGAATGATTAGAGGTCTTGGGGCCGAAACGATCTCAACCTATTCTCAA696260.2739237753373394No Hit
GGCCGAATGATTAGAGGTCTTGGGGCCGAAACGATCTCAACCTATTCTCAA443990.1746752894206551No Hit
CGGGATGAAAAATTATAACCAAGCATAATATAGCAAGGACTAACCCCTATA370630.14581387535299759No Hit
GGGGAAAGATGAAAAATTATAACCAAGCATAATATAGCAAGGACTAACCCC311070.12238168039839452No Hit
CGGCGAATGATTAGAGGTCTTGGGGCCGAAACGATCTCAACCTATTCTCAA310240.12205514040826153No Hit
GGGGAATGATTAGAGGTCTTGGGGCCGAAACGATCTCAACCTATTCTCAAA264980.10424887540414242No Hit
GGGAGATGAAAAATTATAACCAAGCATAATATAGCAAGGACTAACCCCTAT262640.10332826868497232No Hit
GGCATGAAAAATTATAACCAAGCATAATATAGCAAGGACTAACCCCTATAC257310.10123133115797374No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)