FastQCFastQC Report
Fri 4 Aug 2023
EGAF00008101670

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008101670
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33137117
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGC1772900.5350193862670672No Hit
GGGTCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGC1702020.5136294747669208No Hit
GGCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGCGAAATCTCG669610.20207249773720506TruSeq Adapter, Index 6 (97% over 36bp)
GGGCACCGCGACGCGGCGCGTGCGCGGGCGGGGCCCGCGTGCCCGTTCGTT576880.17408877181439775No Hit
GGCCCCCCACCGCGACGCGGCGCGTGCGCGGGCGGGGCCCGCGTGCCCGTT497280.15006737007326257No Hit
GGGCGGAGGGCGAGGCCCGCGGCGGCGCCGCCGCCGCCGCGCGCTTCCCTC419350.12654993492644517No Hit
GGCCCCCACCGCGACGCGGCGCGTGCGCGGGCGGGGCCCGCGTGCCCGTTC411760.1242594520217314No Hit
GGGCAATATCTACAATCAACCAACAAGTCATTATTACCCTCACTGTCAACC357680.10793938410514108No Hit
GGCCCCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGAC352620.10641239550199856No Hit
GGGCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGCACACCCGTCT340400.10272468784776902No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)