FastQCFastQC Report
Fri 4 Aug 2023
EGAF00008101672

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008101672
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22825563
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGC624030.2733908469201833No Hit
GGGTCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGC484440.21223572886241623No Hit
GGGGATGAAAAATTATAGCCAAGCATAATATAGCAAGGACTAACCCCTATA422350.18503377112757308No Hit
GGCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTCTCGCGCATCTCG369340.1618098094666931TruSeq Adapter, Index 8 (97% over 36bp)
GGCGATGAAAAATTATAGCCAAGCATAATATAGCAAGGACTAACCCCTATA334840.14669517680681088No Hit
GGGCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGCACACCCGTCT320590.14045217636033774No Hit
GGCCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGCACACCCG314230.13766582668738556No Hit
GGCCCCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGAC287870.12611737112464652No Hit
GGCCCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGCACACCC238450.1044662074709833No Hit
GGGCAATATCTACAATCAACCAACAAGTCATTATTACCCTCACTGTCAACC233240.10218367888669383No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)