FastQCFastQC Report
Fri 4 Aug 2023
EGAF00008101673

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008101673
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20248021
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGC555320.2742589016477215No Hit
GGGTCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGC444220.21938934180283595No Hit
GGCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGCGAAATCTCG294830.1456092918907976TruSeq Adapter, Index 6 (97% over 36bp)
GGGGATGAAAAATTATAACCAAGCATAATATAGCAAGGACTAACCCCTATA243670.12034262508913834No Hit
GGCCCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGCACACCC217800.10756606781472619No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)