FastQCFastQC Report
Fri 4 Aug 2023
EGAF00008101678

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008101678
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29943492
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATTCAGAAATCTCG897220.2996377309633759TruSeq Adapter, Index 13 (97% over 38bp)
GGCTCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGC764760.255401073461973No Hit
GGGTCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGC643970.21506175699213706No Hit
GGCCCCCCACCGCGACGCGGCGCGTGCGCGGGCGGGGCCCGCGTGCCCGTT626890.2093576794583611No Hit
GGCCCCCACCGCGACGCGGCGCGTGCGCGGGCGGGGCCCGCGTGCCCGTTC510750.17057128807822414No Hit
GGGCACCGCGACGCGGCGCGTGCGCGGGCGGGGCCCGCGTGCCCGTTCGTT492970.16463343687503115No Hit
GGCCCCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGAC461060.1539766971734626No Hit
GGCCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGCACACCCG409900.13689118156292526No Hit
GGGGATGAAAAATTATAACCAAGCATAATATAGCAAGGACTAACCCCTATA400900.1338855200989918No Hit
GGGCAATATCTACAATCAACCAACAAGTCATTATTACCCTCACTGTCAACC383470.12806455573050732No Hit
GGGCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGCACACCCGTCT367710.12280130854477493No Hit
GGCCCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGCACACCC358590.11975557159465569No Hit
GGCGATGAAAAATTATAACCAAGCATAATATAGCAAGGACTAACCCCTATA331180.11060166262505389No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)