FastQCFastQC Report
Fri 4 Aug 2023
EGAF00008101703

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008101703
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38843374
Sequences flagged as poor quality0
Sequence length51
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCGGAGGGCGAGGCCCGCGGCGGCGCCGCCGCCGCCGCGCGCTTCCCTC1144590.2946680172530841No Hit
GGGTCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGC1019010.26233817896457706No Hit
GGGCACCGCGACGCGGCGCGTGCGCGGGCGGGGCCCGCGTGCCCGTTCGTT913170.23509028850068484No Hit
GGGGGGCCGGGCCCGGCGTCCCAGCGGGTTGGGACGCGGCGGCCGGCGGGC886070.22811355161886812No Hit
GGCCCCCCACCGCGACGCGGCGCGTGCGCGGGCGGGGCCCGCGTGCCCGTT864650.22259909759641375No Hit
GGCTCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGC782210.20137540060242964No Hit
GGCCCCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGAC724240.18645136233531104No Hit
GGCCCCCACCGCGACGCGGCGCGTGCGCGGGCGGGGCCCGCGTGCCCGTTC684120.17612270242023775No Hit
GGCCGGAGGGCGAGGCCCGCGGCGGCGCCGCCGCCGCCGCGCGCTTCCCTC592610.1525639868462508No Hit
GGGCAAAATAGTGGGAAGATTTATAGGTAGAGGCGACAAACCTACCGAGCC588190.15142608363526816No Hit
GGGCGGGCCGGGCCCGGCGTCCCAGCGGGTTGGGACGCGGCGGCCGGCGGG518260.13342301315019647No Hit
GGGCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGACAC460550.11856591036607685No Hit
GGGCGGAGGGCGAGGCCCGCGGCGGCGCCGCCGCCGCGCGCTTCCCTCCGC457710.11783476893639569No Hit
GGCCCCTTCCCGTGGATCGCCCCAGCTGCGGCGGGCGTCGCGGCCGCCCCC454830.1170933297400993No Hit
GGGACCGCGACGCGGCGCGTGCGCGGGCGGGGCCCGCGTGCCCGTTCGTTC447380.11517537070801316No Hit
GGCCCGCGACGCGGCGCGTGCGCGGGCGGGGCCCGCGTGCCCGTTCGTTCG446970.11506981860020708No Hit
GGCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGCGAAATCTCG423100.10892462637257TruSeq Adapter, Index 6 (97% over 36bp)
CGGCGGAGGGCGAGGCCCGCGGCGGCGCCGCCGCCGCCGCGCGCTTCCCTC422150.10868005441545836No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)