FastQCFastQC Report
Fri 4 Aug 2023
EGAF00008101706

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008101706
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44596099
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGATGAAAAATTATAGCCAAGCATAATATAGCAAGGACTAACCCCTATA3687620.8268929531257879No Hit
GGCGATGAAAAATTATAGCCAAGCATAATATAGCAAGGACTAACCCCTATA2245100.5034296833900203No Hit
GGGTCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGC1422620.31900099602882304No Hit
GGCTCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGC1391690.312065411819989No Hit
CGGGATGAAAAATTATAGCCAAGCATAATATAGCAAGGACTAACCCCTATA1267500.28421768460061947No Hit
GGGCAAAATAGTGGGAAGATTTATAGGTAGAGGCGACAAACCTACCGAGCC1263150.2832422629611617No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTG1014260.22743244874400334No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAG877870.19684905623695922No Hit
GGGAGATGAAAAATTATAGCCAAGCATAATATAGCAAGGACTAACCCCTAT822630.18446232259014406No Hit
GGGCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGCACACCCGTCT811590.18198676973965816No Hit
GGCCCCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGAC745400.16714466437972522No Hit
GGCATGAAAAATTATAGCCAAGCATAATATAGCAAGGACTAACCCCTATAC722250.16195362737893285No Hit
GGCCCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGCACACCC718180.16104099150017584No Hit
GGGATGAAAAATTATAGCCAAGCATAATATAGCAAGGACTAACCCCTATAC680860.1526725465382073No Hit
GGCCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGCACACCCG660350.14807348956687894No Hit
GGGGAAAGATGAAAAATTATAGCCAAGCATAATATAGCAAGGACTAACCCC603470.13531901075024522No Hit
GGGGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCC594170.13323362655554244No Hit
GGGCAATATCTACAATCAACCAACAAGTCATTATTACCCTCACTGTCAACC572020.12826682441439552No Hit
GGGTAGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCTAAATCC567440.12723982875721931No Hit
GGGCACCCGTCTATGTAGCAAAATAGTGGGAAGATTTATAGGTAGAGGCGA534590.119873713617866No Hit
CGGCAAAATAGTGGGAAGATTTATAGGTAGAGGCGACAAACCTACCGAGCC534280.11980420081137591No Hit
GGGCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGACAC520570.11672994088563667No Hit
GGCCAAAATAGTGGGAAGATTTATAGGTAGAGGCGACAAACCTACCGAGCC505130.11326775465271077No Hit
GGCCTCTAAATCCCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCT504720.11317581836025614No Hit
GGGGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGCACACCCGTCTA477970.10717753586474009No Hit
GGCCCTGCCCAGTGACACATGTTTAACGGCCGCGGTACCCTAACCGTGCAA476730.10689948463877973No Hit
GGCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGACACT470760.10556080252669633No Hit
GGGGGCGACAAACCTACCGAGCCTGGTGATAGCTGGTTGTCCAAGATAGAA469730.10532984062126152No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)