FastQCFastQC Report
Fri 4 Aug 2023
EGAF00008101709

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008101709
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31265356
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGTCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGC1015740.32487715796359395No Hit
GGCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGCGAAATCTCG998850.31947501253464056TruSeq Adapter, Index 6 (97% over 36bp)
GGCTCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGC891030.28498955841091334No Hit
GGCCCCTTCCCGTGGATCGCCCCAGCTGCGGCGGGCGTCGCGGCCGCCCCC739830.23662932224408384No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTG658830.2107220528689966No Hit
GGGCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGCACACCCGTCT474610.15180060639642165No Hit
GGCCCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGCACACCC453860.14516386763675423No Hit
GGGCGGAGGGCGAGGCCCGCGGCGGCGCCGCCGCCGCCGCGCGCTTCCCTC429320.13731492454459818No Hit
GGGCGTCGCGCGCGCGTCCGCTGGGGGCGGGGAGCGGTCGGGCGGCGGCGG413020.1321014863864016No Hit
GGCCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGCACACCCG409940.1311163704644847No Hit
GGGGATGAAAAATTATAACCAAGCATAATATAGCAAGGACTAACCCCTATA360200.11520738801119042No Hit
GGGCACCCGTCTATGTAGCAAAATAGTGGGAAGATTTATAGGTAGAGGCGA336170.10752156476324785No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)