FastQCFastQC Report
Fri 4 Aug 2023
EGAF00008101711

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008101711
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24015714
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCGATAGATCTCG2332660.9713057042568045TruSeq Adapter, Index 1 (97% over 36bp)
GGGTCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGC1002520.41744334563611146No Hit
GGCTCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGC855470.356212603131433No Hit
GGCCCCTTCCCGTGGATCGCCCCAGCTGCGGCGGGCGTCGCGGCCGCCCCC558680.2326310181741838No Hit
GGGCGTCGCGCGCGCGTCCGCTGGGGGCGGGGAGCGGTCGGGCGGCGGCGG530640.2209553294980112No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTG395530.16469633174345766No Hit
GGGGGGGGCCCTCCGTCCCCCTAAGCGCAGACCCGGCGGCGTCCGCCCTCC386940.16111950700278993No Hit
GGGCACCCGTCTATGTAGCAAAATAGTGGGAAGATTTATAGGTAGAGGCGA345360.14380584312421443No Hit
GGCCCCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGAC340320.1417072171995386No Hit
GGGCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGCACACCCGTCT325540.13555291339662023No Hit
GGCAAGATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCGATAGATCTC298010.12408958567711124TruSeq Adapter, Index 1 (97% over 36bp)
GGGCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGACAC264800.11026113985201523No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)